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Proteomics tools for mining sequence databases 
in conjunction with Mass Spectrometry experiments.

ProteinProspector Tools
Database Search Programs
MS-Fit MS-Tag MS-Homology MS-Bridge
MS-Fit Upload MS-Seq MS-Pattern MS-NonSpecific
Peptide / Protein MS Utility Programs
MS-Digest MS-Product MS-Filter MS-Viewer
MS-Isotope MS-Comp
Database Management

Video Tutorials
User's Manual
Bug Listing
Revision History
Automation Guidance
Local Installation    LINUX    Windows

Useful Tables

Mutation Mass Shifts
Dipeptide Masses
Trypsin Autolysis Products
Glycosylation Modification Masses
Averagine Distributions

MS-Viewer Repository Browser
Useful Links

Prospector email
These programs were developed in the UCSF Mass Spectrometry Facility, which is directed by Dr. Alma Burlingame, Professor of Chemistry and Pharmaceutical Chemistry at UCSF and funded by the NIH National Institute for General Medical Sciences.